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Species belonging to selected taxon:
Solanum lycopersicum
ABOUT THIS RECORD
ID:
MNEST054566
species:
Solanum lycopersicum
miRNA family:
MIR1919
source:
PMRD, original name:
sly-miR1919a
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACGAGAGTCATCTGTGACAGG
miRNA*
TGTCGCAGATGACTCTCGATCT
mismatches:
0
bulges:
1
View larger
pre-miRNA
ATCTTCCGGTAGTCC
TGTCGCAGATGACTCTCGATCT
TGTCATTAAGCCCCTTTCTCTAAGTCTAATTAATTTGAATTCAATGTGGTAGG
ACGAGAGTCA
TCTGTGACAGG
ATTATGGAAGAT
dot-bracket secondary structure
((((((((.((((((
((((((((((((((((((.(((
(..(((.......(((.....)))..........(((....))).)))..)))
))))))))))
)))))))))))
))))))))))))
SIMILARITIES
miRBase
sly-MIR1919a
:
1e-65
PMRD
sly-miR1919c
:
2e-21
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
sly-MIR1919a
from miRBase (
MNEST041553
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"